TASUKE+

TASUKE+ is a web-based genome browser that visualizes large-scale resequencing data generated by next-generation sequencing technologies.
The variation and read depth of multiple genomes, as well as annotations, can be shown simultaneously at various scales. The frequency of Variants and Depth of coverage are shown by gradational colors in a block whose size is variable from 1bp to 100kb. Maximally 200 blocks can be shown at one window, so that up to 20 Mb can be viewed.
TASUKE+ shows the GWAS plot with your GWAS data.



Screenshot_of_TASUKE_multiple_genome_browser

Example

Rice 176 GWAS data (Nipponbare reference)
(Yano et al. 2016 Nat Genet)
Rice 50 resequencing data (Nipponbare reference)
https://tasuke-plus.dna.affrc.go.jp

What's New

TASUKE+ Version 20210831 was released. (August 31, 2021) New!
Implemented system phylogenetic tree function. Implemented function to reflect result of the phylogenetic tree sub tool in the system phylogenetic tree. Implemented function to search and highlight accession on the track. Implemented cursor lines function. In AccessionManager, it is now possible to sort with all accession parameters(Variety, Subvariety, Origin, Origin2, Type, Other1, Other2). Speed up some functions. Several Bug fixes.

Download: tasuke-plus_20210831.tar 


A new paper about TASUKE+ was published. [Open Access!!]


 About TASUKE+

Overview of the tools and usage.

 How to Get & Install

Follow these 4 steps and get TASUKE+ browser with your own data.

 Link

TASUKE user's Databases.

 Contact Us

Ask any questions on installing, and we will support you. Bug report, suggestions and any comments are also welcome!!

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