How to use (if using the previous version, check here)



Views

Tracks
Tasuke_screenshot

Frequency Mode
Tasuke_screenshot

Absolute position mode

Tasuke_screenshot


snpEff Mode

Tasuke_screenshot


Effect category

Tasuke_screenshot


View of 1bp Scale

Tasuke_screenshot


Annotation track

Tasuke_screenshot



Action

Search & Jump
Tasuke_screenshot


Move
Tasuke_screenshot

Zoom
Tasuke_screenshot

Tools

Design PRIMER
  1.Open setting dialog
PRIMER_screenshot


  2.Parameter setting
    2-1.Main settings PRIMER_screenshot


    2-2.General settings(Optional) PRIMER_screenshot


    2-3.ePCR settings(Optional) PRIMER_screenshot


  3.Result
    3-1.Result PRIMER_screenshot


    3-2.Jump BLAST with primer PRIMER_screenshot


    3-3.Move to the perimer designing position PRIMER_screenshot


    3-4.ePCR Result PRIMER_screenshot


    3-5.Download Result PRIMER_screenshot


    3-6.Download Result(using ePCR) PRIMER_screenshot

Create Phylogenetic Tree
  1.Open setting dialog
PRIMER_screenshot


  2.Parameter setting
    2-1.Main settings(with Chromosome and Position) PRIMER_screenshot


    2-2.Main settings(with GeneID) PRIMER_screenshot


  3.Result
    3-1.Result PRIMER_screenshot


    3-2.Change Circle phylogram PRIMER_screenshot


    3-3.Change Cladogram PRIMER_screenshot


    3-4.Sort snpblock table PRIMER_screenshot


    3-5.Download tree data PRIMER_screenshot


    3-6.Select Accession (option) PRIMER_screenshot

BLAST
  1.Open setting dialog
PRIMER_screenshot


  2.Parameter setting
    2-1.Main settings PRIMER_screenshot


    2-2.Alignment Options PRIMER_screenshot


  3.Result
    3-1.Result PRIMER_screenshot


    3-2.BLAST result using primer PRIMER_screenshot


    3-3.Jump alignment section of BLAST result PRIMER_screenshot



GWAS
  1.Open GWAS dialog
GWAS_screenshot


  2.Show information
GWAS_screenshot


  3.Zoom in manhattan plot
GWAS_screenshot


  4.Zoom out manhattan plot
GWAS_screenshot


  5.Pan manhattan plot
GWAS_screenshot


  6.Change chromosome
GWAS_screenshot


  7.Change phenotype
GWAS_screenshot


  8.Filter By SnpEff impact
GWAS_screenshot


  9.Sort By Position
GWAS_screenshot


  10.Move postiion on GWAS plot
GWAS_screenshot


  11.Move postiion on variant list
GWAS_screenshot