About the naming
So, TASUKE browser is aimed to help researchers for visualization and sharing of multiple genomes resequencing data from species having larger genome.
多 (TA) means "a lot of, many"
助 (SUKE) means "help"
Systems of TASUKE
To show and manage huge amount of resequencing data with smooth manner, TASUKE uses a client-server system. So, TASUKE requires a LAMP server consisting of Linux, Apache, MySQL and PHP. This system is also aimed to share the data with collaborators or the public.
A web browser which can accept HTML5 is required. We checked the operation of TASUKE with Internet Explore(9 or later), Firefox and Google Chrome on Win and Mac.
It can be used on tablet device which has android browser or Safari.
(a) Menu bar for various functions.
(b) Chromosomal positions.
(c) Annotation tracks.
(d) GWAS manhattan plot.
(e) Sample names and related information.
(f) Main panel for variant frequencies and average read depths of block regions.
(g) Magnified view of blocks. Blocks without reads are yellow
(h) Indicator for variant frequency and depth.
(i) Overall SNP density.
(j) Zoom bar and Search bar.
(k) Variants and average read depth information are shown by clicking on a block.
(l) Variant effects are shown by clicking on the sub-window of (k).
(m) Amino acids and nucleotides on a reference genome.
(n) Variants and their effects.
(o) Indicator of levels of variant effects.