TASUKE+

TASUKE+ is a web-based genome browser that visualizes large-scale resequencing data generated by next-generation sequencing technologies.
The variation and read depth of multiple genomes, as well as annotations, can be shown simultaneously at various scales. The frequency of Variants and Depth of coverage are shown by gradational colors in a block whose size is variable from 1bp to 100kb. Maximally 200 blocks can be shown at one window, so that up to 20 Mb can be viewed.
TASUKE+ shows the GWAS plot with your GWAS data.



Screenshot_of_TASUKE_multiple_genome_browser

Example

Rice 176 GWAS data (Nipponbare reference)
(Yano et al. 2016 Nat Genet)
Rice 50 resequencing data (Nipponbare reference) (Version 20231214)
https://tasuke-plus.dna.affrc.go.jp

What's New

TASUKE+ Version 20231214 was released. (December 14, 2023) New!
We have improved the basic functions purposing on browsing large dataset (>1000 samples). See here for recommended server settings.
See here for how to update from an older version.
Main improvements are ...

  • For System phylogenetic tree, it is now possible to create a phylogenetic tree from Newick file.
  • For PrimerDesign's e-PCR function, MFEprimer3 is now supported
  • For track display, Implemented a function to specify the default genome region to be displayed on first access.
  • and Optimization for browsing speed and several Bug fixes.
  • For more details, refer to release note.

Download: tasuke-plus_20231214.tar 

 About TASUKE+

Overview of the tools and usage.

 How to Get & Install

Follow these 4 steps and get TASUKE+ browser with your own data.

 Link

TASUKE user's Databases.

 Contact Us

Ask any questions on installing, and we will support you. Bug report, suggestions and any comments are also welcome!!

E-mail: